PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500271.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 631aa    MW: 69978.2 Da    PI: 5.2304
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-06270290526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_004500271.1 270 PCPEFRK-GSCSKGDGCEYAHG 290
                     8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.1E-1266185IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-771142IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1271183IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.70875184IPR020683Ankyrin repeat-containing domain
SMARTSM002482.775105IPR002110Ankyrin repeat
CDDcd002043.10E-1177148No hitNo description
PROSITE profilePS5008810.766110145IPR002110Ankyrin repeat
SMARTSM002480.0016110142IPR002110Ankyrin repeat
SMARTSM003560.025265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4298328IPR000571Zinc finger, CCCH-type
SMARTSM0035636300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MCSGSSPKPS PSGLIEEHEY ERQEELHQKV SALLEFSATD DLMAFKDAVE KDDHGVDEVG  60
LWYGRKIGSK EMSYEERTPL MIAALFGSKG VLSYILGTGR VHVNRRCGSD GATALHCAVF  120
GCSANSPEVI KLLLDASADV SSVDANGNRS SDLIDSVSNS IFGSRKRILQ AILEGTDDVD  180
VVDDDDYFKE EKQQPNAGTP RIEKKDYPID LSLPDIKNGI YSSDEFRMFS FKVKTCSRAY  240
SHDWTECPFV HPGENARRRD PKKYHYTCVP CPEFRKGSCS KGDGCEYAHG IFECWLHPAQ  300
YRTRLCKDET ECTRRVCFFA HKPEELRPLY ASTGSALPSP RSVDPYTLNS PSSLIQRAST  360
PPLTPSAASS PMNGTMLWQT QLHSAAVPTL QMPRSRLKTS LNVRDTDLDM ELLELENRLM  420
RKLMMEEMAA GISTPSKWQN SMPNSPSYPV SLTDHMGESN RFSGVNPTNL EDIFASHFQS  480
PNGMQNVNQQ LWGYPSDVTT SNRIGSPPFM ADPSMNPRYA AFSKRSQSFI ERGVASFNSE  540
LPSVTSVAAE PSSTFSSWGS SNGKLDWSIC GDELNKMRKS YSFAFQNRNS STSTMAATAV  600
PPNDGEPDVS WVNSLVKDAP TMEYDQCCVE D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500271.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLI1LLK70.0I1LLK7_SOYBN; Uncharacterized protein
STRINGGLYMA11G27130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-169C3H family protein